# vim:ft=plumed

ENVIRONMENTSIMILARITY ...
 SPECIES=1-288:3
 SIGMA=0.05
 CRYSTAL_STRUCTURE=CUSTOM
 REFERENCE_1=env1.pdb
 REFERENCE_2=env2.pdb
 REFERENCE_3=env3.pdb
 REFERENCE_4=env4.pdb
 LABEL=es
 MEAN
 MORE_THAN={RATIONAL R_0=0.5 NN=12 MM=24}
... ENVIRONMENTSIMILARITY

PRINT ARG=es.mean,es.morethan FILE=COLVAR STRIDE=1

