d1: READ FILE=colv_in VALUES=data

ff: COLLECT_FRAMES ARG=d1 STRIDE=1 

ss1: EUCLIDEAN_DISSIMILARITIES USE_OUTPUT_DATA_FROM=ff 
PRINT_DISSIMILARITY_MATRIX USE_OUTPUT_DATA_FROM=ss1 FILE=mymatrix.dat FMT=%8.4f

ll1: LANDMARK_SELECT_STRIDE USE_OUTPUT_DATA_FROM=ss1 NLANDMARKS=5 
ss2: EUCLIDEAN_DISSIMILARITIES USE_OUTPUT_DATA_FROM=ll1 
OUTPUT_ANALYSIS_DATA_TO_PDB USE_OUTPUT_DATA_FROM=ll1 FILE=output-stride.pdb
PRINT_DISSIMILARITY_MATRIX USE_OUTPUT_DATA_FROM=ll1 FILE=mymatrix2.dat FMT=%8.4f

ll2: LANDMARK_SELECT_FPS USE_OUTPUT_DATA_FROM=ss1 NLANDMARKS=3
OUTPUT_ANALYSIS_DATA_TO_PDB USE_OUTPUT_DATA_FROM=ll2 FILE=output-fps.pdb

ff2: COLLECT_FRAMES ARG=d1 CLEAR=6 STRIDE=1
ss3: EUCLIDEAN_DISSIMILARITIES USE_OUTPUT_DATA_FROM=ff2 
oo: PRINT_DISSIMILARITY_MATRIX USE_OUTPUT_DATA_FROM=ss3 FILE=mymatrix3.dat STRIDE=6 FMT=%8.4f
